pyteseo.io.substances

Manage offline substance data stored in xlsx-files @ pyteseo/data/substances

Attributes

`fetch_substances_properties_from_teseo_management_api`(→ list)
`fetch_sar_properties_from_teseo_management_api`(→ list)
`fetch_sar_properties_from_pyteseo_db`(→ list)
`fetch_substances_properties_from_pyteseo_db`(...)	retrieve a substance in a pandas Dataframe
`get_offline_substance_names`(→ list)	get all substance names availables for a specific substance type
`generate_substances_df`(→ pandas.DataFrame)	convert json substance response from TESEO.Management.API to pd.DataFrame

pyteseo.io.substances.fetch_substances_properties_from_teseo_management_api(names: list, auth_header: str) → list

pyteseo.io.substances.fetch_sar_properties_from_teseo_management_api(names: list, auth_header: str) → list

pyteseo.io.substances.fetch_sar_properties_from_pyteseo_db(names: list) → list

pyteseo.io.substances.fetch_substances_properties_from_pyteseo_db(substance_type: str, substance_names: list) → pandas.DataFrame

retrieve a substance in a pandas Dataframe

Parameters:

Raises:

FileNotFoundError – if database (oil.xlsx and hns.xlsx) are not located at SUBSTANCES_OFFLINE_PATH env variable
ValueError – if substance name is not in the database

Returns:

substances data

Return type:

pd.DataFrame

pyteseo.io.substances.get_offline_substance_names(substance_type: str) → list

get all substance names availables for a specific substance type

Parameters:: substance_type (str) – [“oil”, “hns”]
Raises:: FileNotFoundError – if database (oil.xlsx or hns.xlsx) are not located at SUBSTANCES_OFFLINE_PATH env variable
Returns:: names of the susbstances
Return type:: list

pyteseo.io.substances.generate_substances_df(json_response: list) → pandas.DataFrame

convert json substance response from TESEO.Management.API to pd.DataFrame